Lenwood S. Heath

Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA

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Papers152 papers

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Systematic auditing is essential to debiasing machine learning in biology

Fatma-Elzahraa Eid,Haitham Elmarakeby, Yujia Alina Chan, Nadine Fornelos Martins,Mahmoud ElHefnawi, Eli Van Allen,Lenwood S. Heath, Kasper Lage

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Characterization of protein-protein interactions between rice viruses and vector insects

Junjie Zhu, Fatma Elzahraa Eid, Lu Tong, Wan Zhao, Wei Wang,Lenwood S Heath,Le Kang,Feng Cui

Insect science, (2020)

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LINbase: a web server for genome-based identification of prokaryotes as members of crowdsourced taxa

Long Tian, Chengjie Huang, Reza Mazloom,Lenwood S Heath, Boris A Vinatzer

Nucleic acids research, (2020)

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Effect of antibiotic use and composting on antibiotic resistance gene abundance and resistome risks of soils receiving manure-derived amendments

Chaoqi Chen, Christine A Pankow,Min Oh,Lenwood S Heath,Liqing Zhang, Pang Du,Kang Xia,Amy Pruden

Environment International, (2019): 233-243

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Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences

Marco Enrique Mechan Llontop, Parul Sharma, Marcela Aguilera Flores, Shu Yang, Jill Pollock, Long Tian, Chengjie Huang, Steven Rideout,Lenwood S Heath, Song Li, Boris Vinatzer

Phytopathology, pp.1-27, (2019)

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Cyberbiosecurity Challenges of Pathogen Genome Databases

Boris A. Vinatzer,Lenwood S. Heath, Hussain M. J. Almohri, Michael J. Stulberg,Christopher Lowe,Song Li

Frontiers in Bioengineering and Biotechnology, (2019)

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MetaMLP: A fast word embedding based classifier to profile target gene databases in metagenomic samples

Gustavo Alonso Arango-Argoty,Lenwood S Heath,Amy Pruden,Peter Vikesland,Liqing Zhang

bioRxiv, pp.569970-21, (2019)

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Comparing Time Series Transcriptome Data Between Plants Using A Network Module Finding Algorithm

Jiyoung Lee,Lenwood Heath,Ruth Grene,Song Li

Plant Methods, no. 1 (2019): 1-16

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LINbase: A Web service for genome-based identification of microbes as members of crowdsourced taxa

Long Tian, Chengjie Huang,Lenwood S. Heath,Boris A. Vinatzer

Bibtex

NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes

Gustavo A Arango-Argoty, Dongjuan Dai,Amy Pruden,Peter Vikesland,Lenwood S Heath,Liqing Zhang

bioRxiv, pp.483248-37, (2018)

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MetaCompare: A computational pipeline for prioritizing environmental resistome risk

Min Oh,Amy Pruden, Chaoqi Chen,Lenwood S Heath,Kang Xia,Liqing Zhang

FEMS microbiology ecology, (2018)

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ARG-miner: A web platform for crowdsourcing-based curation of antibiotic resistance genes

Gustavo Arango Argoty, Giselle Kristi Guron, Emily Garner,Maria V. Riquelme,Lenwood S. Heath,Amy Pruden,Peter J. Vikesland,Liqing Zhang

bioRxiv, pp.274282-29, (2018)

Cited by4Bibtex

DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data

Gustavo Arango-Argoty, Emily Garner,Amy Pruden,Lenwood S Heath,Peter Vikesland,Liqing Zhang

Microbiome, no. 1 (2018): 23-23

Cited by21WOSBibtex

MCAT: Motif Combining and Association Tool

Yanshen Yang, Jeffrey A Robertson,Zhen Guo, Jake Martinez, Christy Coghlan,Lenwood S Heath

Journal of computational biology : a journal of computational molecular cell biology, (2018)

WOSEIBibtex

Panaconda: Application of pan-synteny graph models to genome content analysis

Andrew S. Warren,James J. Davis,Alice R. Wattam,Dustin Machi,João C. Setubal,Lenwood S. Heath

bioRxiv, pp.215988-15, (2017)

Cited by1Bibtex

Bioinformatics of DNA [Scanning the Issue]

Lenwood S. Heath, Héctor Corrada Bravo, Mario Caccamo, Michael Schatz

Proceedings of the IEEE, no. 3 (2017): 419-421

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PEAK: Integrating Curated and Noisy Prior Knowledge in Gene Regulatory Network Inference

Doaa Altarawy, Fatma-Elzahraa Eid,Lenwood S. Heath

Journal of Computational Biology, no. 9 (2017): 863-873

Cited by3EIWOSBibtex

Beacon Editor: Capturing Signal Transduction Pathways Using the Systems Biology Graphical Notation Activity Flow Language

Elmarakeby Haitham, Arefiyan Mostafa, Myers Elijah,Li Song, Grene Ruth,Heath Lenwood S

Journal of Computational Biology, no. 12 (2017)

Cited by1WOSEIBibtex

MicroTarget: MicroRNA target gene prediction approach with application to breast cancer

Hanaa Torkey,Lenwood S. Heath,Mahmoud ElHefnawi

J. Bioinformatics and Computational Biology, no. 4 (2017): 1-17

EIWOSBibtex

Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data

Delasa Aghamirzaie, Karthik Raja Velmurugan, Shuchi Wu, Doaa Altarawy,Lenwood S Heath,Ruth Grene

F1000Research, (2017): 372

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