Kerrie Barry

US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, 9458 Walnut Creek, CA, USA

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Papers153 papers

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101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens

S. Haridas, R. Albert, M. Binder, J. Bloem,K. LaButti, A. Salamov, B. Andreopoulos, S.E. Baker,K. Barry, G. Bills, B.H. Bluhm, C. Cannon

Studies in Mycology, (2020): 141-153

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Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics

Natalie Vandepol, Julian Liber, Alessandro Desirò, Hyunsoo Na, Megan Kennedy,Kerrie Barry,Igor V Grigoriev,Andrew N Miller,Kerry O'Donnell,Jason E Stajich,Gregory Bonito

Fungal diversity, no. 1 (2020): 267-289

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Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

Lotus A Lofgren,Nhu H Nguyen,Rytas Vilgalys,Joske Ruytinx,Hui-Ling Liao, Sara Branco,Alan Kuo,Kurt LaButti,Anna Lipzen, William Andreopoulos,Jasmyn Pangilinan,Robert Riley

The New phytologist, (2020)

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Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica

Paula Nizovoy,Nicolás Bellora,Sajeet Haridas, Hui Sun,Chris Daum,Kerrie Barry,Igor V Grigoriev,Diego Libkind,Laurie B Connell,Martín Moliné

FEMS yeast research, (2020)

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Genome biology of the paleotetraploid perennial biomass crop Miscanthus

Therese Mitros, Adam M Session, Brandon T James, Guohong Albert Wu, Mohammad B Belaffif,Lindsay V Clark,Shengqiang Shu, Hongxu Dong, Adam Barling, Jessica R Holmes, Jessica E Mattick, Jessen V Bredeson

Nature communications, no. 1 (2020): 5442-5442

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Single-parent expression drives dynamic gene expression complementation in maize hybrids

Zhi Li, Peng Zhou, Rafael Della Coletta,Tifu Zhang, Alex B Brohammer, Christine O'Connor,Brieanne Vaillancourt,Anna Lipzen,Chris Daum,Kerrie Barry,Natalia de Leon,Cory D Hirsch

The Plant journal : for cell and molecular biology, (2020)

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Genomic adaptations of the green alga Dunaliella salina to life under high salinity

Jurgen E. W. Polle, Sara Calhoun, Zaid McKie-Krisberg,Simon Prochnik, Peter Neofotis,Won C. Yim, Leyla T. Hathwaik,Jerry Jenkins,Henrik Molina,Jakob Bunkenborg,V Grigoriev Igor,Kerrie Barry

Algal Research, (2020): 101990

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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi, Enikő Kiss,Alan Kuo,Elodie Drula,Annegret Kohler, Marisol Sánchez-García,Emmanuelle Morin,Bill Andreopoulos,Kerrie W Barry,Gregory Bonito, Marc Buée, Akiko Carver

Nature communications, no. 1 (2020): 5125-5142

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A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

Brigitte T Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi Hazarika,Jane Grimwood,Sujan Mamidi,Jerry Jenkins, Paul P Grabowski,Avinash Sreedasyam,Shengqiang Shu,Kerrie Barry

Genome biology, no. 1 (2020): 259

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A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

Sujan Mamidi,Adam Healey,Pu Huang,Jane Grimwood,Jerry Jenkins,Kerrie Barry,Avinash Sreedasyam,Shengqiang Shu,John T Lovell, Maximilian Feldman, Jinxia Wu, Yunqing Yu

Nature biotechnology, no. 10 (2020): 1203-1210

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The Setaria viridis genome and diversity panel enables discovery of a novel domestication gene

Sujan Mamidi,Adam Healey,Pu Huang,Jane Grimwood,Jerry Jenkins,Kerrie Barry,Avinash Sreedasyam,Shengqiang Shu,John T. Lovell, Maximilian Feldman, Jinxia Wu, Yunqing Yu

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Metagenome-assembled genomes of phytoplankton communities across the Arctic Circle

A. Duncan,K. Barry,C. Daum, E. Eloe-Fadrosh,S. Roux, S. G. Tringe, K. Schmidt, K. U. Valentin, N. Varghese,I. V. Grigoriev, R. Leggett, V. Moulton

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Author Correction: Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Abbot O. Oghenekaro,Andriy Kovalchuk,Tommaso Raffaello,Susana Camarero, Markus Gressler,Bernard Henrissat, Juna Lee, Mengxia Liu,Angel T. Martínez,Otto Miettinen, Sirma Mihaltcheva,Jasmyn Pangilinan

Scientific Reports, no. 1 (2020): 18199

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Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Abbot O Oghenekaro,Andriy Kovalchuk,Tommaso Raffaello,Susana Camarero, Markus Gressler,Bernard Henrissat, Juna Lee, Mengxia Liu,Angel T Martínez,Otto Miettinen, Sirma Mihaltcheva,Jasmyn Pangilinan

Scientific reports, no. 1 (2020): 5250

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Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect

Meng Xie,Jin Zhang,Vasanth R Singan, Melissa J McGranahan, Peter R LaFayette,Sara S Jawdy,Nancy Engle, Crissa Doeppke,Timothy J Tschaplinski,Mark F Davis,Erika Lindquist,Kerrie Barry

Plant direct, no. 1 (2020)

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The Contributions of the Allopolyploid Parents of the Mesopolyploid Brassiceae are Evolutionarily Distinct but Functionally Compatible

Yue Hao, Makenzie E. Mabry,Patrick P. Edger,Michael Freeling,Chunfang Zheng, Lingling Jin,Robert VanBuren,Marivi Colle,Hong An, R. Shawn Abrahams,Xinshuai Qi,Kerrie Barry

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A willow sex chromosome reveals convergent evolution of complex palindromic repeats

Ran Zhou, David Macaya-Sanz, Craig H Carlson,Jeremy Schmutz,Jerry W Jenkins,David Kudrna, Aditi Sharma,Laura Sandor,Shengqiang Shu,Kerrie Barry,Gerald A Tuskan,Tao Ma

Genome Biology, no. 1 (2020): 1-19

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Sean P Gordon,Bruno Contreras-Moreira, Joshua J Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S Tartaglio, Adam Session,Joel Martin, Amy Cartwright, Andrew Katz, Vasanth R Singan,Eugene Goltsman

Nature communications, no. 1 (2020): 3670-3670

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Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi, Hayat Hage,Elodie Drula, Laurence Lesage-Meessen,Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli,Sacha Grisel, Mireille Haon,François Piumi, Anthony Levasseur

DNA research : an international journal for rapid publication of reports on genes and genomes, (2020)

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Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001

Caleb Walker, Seunghyun Ryu, Sajeet Haridas, Hyunsoo Na, Matthew Zane,Kurt LaButti,Kerrie Barry,Igor V Grigoriev, Cong T Trinh

Microbiology resource announcements, no. 9 (2020)

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