Kerrie Barry

US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, 9458 Walnut Creek, CA, USA

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Papers140 papers

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Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001

Caleb Walker, Seunghyun Ryu, Sajeet Haridas, Hyunsoo Na, Matthew Zane,Kurt LaButti,Kerrie Barry,Igor V Grigoriev, Cong T Trinh

Microbiology resource announcements, no. 9 (2020)

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A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

Brigitte T Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi Hazarika,Jane Grimwood,Sujan Mamidi,Jerry Jenkins, Paul P Grabowski,Avinash Sreedasyam,Shengqiang Shu,Kerrie Barry

Genome biology, no. 1 (2020): 259

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A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

Sujan Mamidi,Adam Healey,Pu Huang,Jane Grimwood,Jerry Jenkins,Kerrie Barry,Avinash Sreedasyam,Shengqiang Shu,John T Lovell, Maximilian Feldman, Jinxia Wu, Yunqing Yu

Nature biotechnology, no. 10 (2020): 1203-1210

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The Setaria viridis genome and diversity panel enables discovery of a novel domestication gene

Sujan Mamidi,Adam Healey,Pu Huang,Jane Grimwood,Jerry Jenkins,Kerrie Barry,Avinash Sreedasyam,Shengqiang Shu,John T. Lovell, Maximilian Feldman, Jinxia Wu, Yunqing Yu

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A comparative genomics study of 23 Aspergillus species from section Flavi

Inge Kjærbølling,Tammi Vesth,Jens C Frisvad, Jane L Nybo, Sebastian Theobald,Sara Kildgaard, Thomas Isbrandt Petersen,Alan Kuo, Atsushi Sato, Ellen K Lyhne, Martin E Kogle,Ad Wiebenga

Nature communications, no. 1 (2020): 1106

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The Contributions of the Allopolyploid Parents of the Mesopolyploid Brassiceae are Evolutionarily Distinct but Functionally Compatible

Yue Hao, Makenzie E. Mabry,Patrick P. Edger,Michael Freeling,Chunfang Zheng, Lingling Jin,Robert VanBuren,Marivi Colle,Hong An, R. Shawn Abrahams,Xinshuai Qi,Kerrie Barry

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Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect

Meng Xie,Jin Zhang,Vasanth R Singan, Melissa J McGranahan, Peter R LaFayette,Sara S Jawdy,Nancy Engle, Crissa Doeppke,Timothy J Tschaplinski,Mark F Davis,Erika Lindquist,Kerrie Barry

Plant direct, no. 1 (2020)

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Sean P Gordon,Bruno Contreras-Moreira, Joshua J Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S Tartaglio, Adam Session,Joel Martin, Amy Cartwright, Andrew Katz, Vasanth R Singan,Eugene Goltsman

Nature communications, no. 1 (2020): 3670

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Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi, Hayat Hage,Elodie Drula, Laurence Lesage-Meessen,Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli,Sacha Grisel, Mireille Haon,François Piumi, Anthony Levasseur

DNA research : an international journal for rapid publication of reports on genes and genomes, (2020)

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The Evolution of an Invasive Plant, Sorghum halepense L. ('Johnsongrass')

Andrew H Paterson,WenQian Kong, Robyn M Johnston, Pheonah Nabukalu, Guohong Wu, William L Poehlman, Valorie H Goff, Krista Isaacs,Tae-Ho Lee,Hui Guo, Dong Zhang,Uzay U Sezen

Frontiers in genetics, (2020): 317

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A willow sex chromosome reveals convergent evolution of complex palindromic repeats

Ran Zhou, David Macaya-Sanz, Craig H Carlson,Jeremy Schmutz,Jerry W Jenkins,David Kudrna, Aditi Sharma,Laura Sandor,Shengqiang Shu,Kerrie Barry,Gerald A Tuskan,Tao Ma

Genome Biology, no. 1 (2020): 1-19

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Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Abbot O Oghenekaro,Andriy Kovalchuk,Tommaso Raffaello,Susana Camarero, Markus Gressler,Bernard Henrissat, Juna Lee, Mengxia Liu,Angel T Martínez,Otto Miettinen, Sirma Mihaltcheva,Jasmyn Pangilinan

Scientific reports, no. 1 (2020): 5250

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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus

Salvatore Casarrubia,Elena Martino, Stefania Daghino,Annegret Kohler,Emmanuelle Morin, Hassine-Radhouane Khouja,Claude Murat,Kerrie W Barry,Erika A Lindquist,Francis M Martin,Silvia Perotto

Frontiers in microbiology, (2020): 341

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Genome sequence of the chestnut blight fungus Cryphonectria parasitica EP155: A fundamental resource for an archetypical invasive plant pathogen

Jo Anne Crouch, Angus Dawe,Andrea Aerts,Kerrie Barry,Alice C L Churchill,Jane Grimwood,Bradley Hillman, Michael G Milgroom,Jasmyn Pangilinan,Myron Smith,Asaf Salamov,Jeremy Schmutz

Phytopathology, (2020)

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Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass ( Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits

Bochra A. Bahri,Guillaume Daverdin, Xiangyang Xu, Jan-Fang Cheng,Kerrie W. Barry,E. Charles Brummer,Ali Missaoui,Katrien M. Devos

BioEnergy Research, no. 1 (2020): 79-99

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Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9

Oliver Xiaoou Dong, Shu Yu, Rashmi Jain, Nan Zhang, Phat Q Duong, Corinne Butler,Yan Li,Anna Lipzen,Joel A Martin,Kerrie W Barry,Jeremy Schmutz, Li Tian

Nature communications, no. 1 (2020): 1178-10

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101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens