基本信息
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职业迁徙
个人简介
She has a broad background in computational biology, with specific training and expertise in key research areas such as sequence analysis, network analysis, statistical analysis and software development.
she carried out whole genome sequence data analysis to automatically annotate newly sequenced genomes and developed software for visualization and exploration of functional association networks. At Delta Search Labs, she focused on integrating heterogeneous data types such as microarray data, genomics data, proteomics and metabolomics data from toxicological treatments, using pathway and network analysis with GeneGO metacore and IPA.
she designed pipelines for whole genome sequencing data analysis to optimize protein expression using MATLAB, R and Perl. At UC Irvine, she has performed next generation sequencing data analysis including exome-sequencing, WGS and RNA-seq data, pathway and network analysis with WGCNA and IPA. Working with huge data sets on a daily basis, she has experience with Unix environment scripting, high performance computing and parallel programing. She is also familiar with popular NGS tools such as Bowtie, Samtools, IGV etc.
研究兴趣
论文共 36 篇作者统计合作学者相似作者
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ICSCpp.131-138, (2023)
Bhaba K Das,Aarthi Kannan, Graham J Velasco, Mikaela D Kunika, Nils Lambrecht,Quy Nguyen,Haibo Zhao,Jie Wu,Ling Gao
Cell reports. Medicineno. 7 (2023): 101101-101101
bioRxiv (Cold Spring Harbor Laboratory) (2023)
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Michael J Workman,Ryan G Lim,Jie Wu,Aaron Frank,Loren Ornelas,Lindsay Panther, Erick Galvez,Daniel Perez,Imara Meepe,Susan Lei, Viviana Valencia,Emilda Gomez,
Stephanie C. Wu,Ahhyun Kim,Yijun Gu, Daniel I. Martinez, Loredana Zocchi,Claire C. Chen,Jocelyne Lopez, Kelsey Salcido, Sarah Singh,Jie Wu,Ali Nael,Claudia A. Benavente
ONCOGENESISno. 1 (2022): 51-12
biorxiv(2022)
Andrea M. Reyes-Ortiz,Edsel M. Abud,Mara S. Burns,Jie Wu,Sarah J. Hernandez, Nicolette McClure,Keona Q. Wang, Corey J. Schulz,Ricardo Miramontes,Alice Lau,Neethu Michael,Emily Miyoshi,
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