Jeremy Schmutz

Stanford Human Genome Center|Department of Genetics|Stanford University|School of Medicine

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Papers185 papers

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Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9

Oliver Xiaoou Dong, Shu Yu, Rashmi Jain, Nan Zhang, Phat Q Duong, Corinne Butler,Yan Li,Anna Lipzen,Joel A Martin,Kerrie W Barry,Jeremy Schmutz, Li Tian

Nature communications, no. 1 (2020): 1178-10

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The Contributions of the Allopolyploid Parents of the Mesopolyploid Brassiceae are Evolutionarily Distinct but Functionally Compatible

Yue Hao, Makenzie E. Mabry,Patrick P. Edger,Michael Freeling,Chunfang Zheng, Lingling Jin,Robert VanBuren,Marivi Colle,Hong An, R. Shawn Abrahams,Xinshuai Qi,Kerrie Barry

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Genome sequence of the chestnut blight fungus Cryphonectria parasitica EP155: A fundamental resource for an archetypical invasive plant pathogen

Jo Anne Crouch, Angus Dawe,Andrea Aerts,Kerrie Barry,Alice C L Churchill,Jane Grimwood,Bradley Hillman, Michael G Milgroom,Jasmyn Pangilinan,Myron Smith,Asaf Salamov,Jeremy Schmutz

Phytopathology, (2020)

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Environmentally responsive QTL controlling surface wax load in switchgrass

Jennifer Bragg, Pernell Tomasi, Li Zhang, Tina Williams, Delilah Wood,John T Lovell,Adam Healey,Jeremy Schmutz, Jason E Bonnette, Prisca Cheng, Lisa Chanbusarakum,Thomas Juenger

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, (2020)

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Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect

Meng Xie,Jin Zhang,Vasanth R Singan, Melissa J McGranahan, Peter R LaFayette,Sara S Jawdy,Nancy Engle, Crissa Doeppke,Timothy J Tschaplinski,Mark F Davis,Erika Lindquist,Kerrie Barry

Plant direct, no. 1 (2020)

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Soybean (Glycine max) Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics

Davoud Torkamaneh,Jérôme Laroche,Babu Valliyodan, Louise O'Donoughue,Elroy Cober,Istvan Rajcan,Ricardo Vilela Abdelnoor,Avinash Sreedasyam,Jeremy Schmutz,Henry T Nguyen,François Belzile

Plant biotechnology journal, (2020)

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Sequencing and Analysis of the Sex Determination Region of Populus trichocarpa

Ran Zhou,David Macaya-Sanz,Jeremy Schmutz,Jerry W Jenkins,Gerald A Tuskan,Stephen P DiFazio

Genes, no. 8 (2020)

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Chloroplast genome sequences of Carya illinoinensis from two distinct geographic populations

Xinwang Wang, Hormat Shadgou Rhein, Jerry Jenkins,Jeremy Schmutz,Jane Grimwood,L. J. Grauke, Jennifer J. Randall

Tree Genetics & Genomes, no. 4 (2020): 1-14

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Arabidopsis C-terminal Binding Protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33

Meng Xie,Jin Zhang, Tao Yao, Anthony C Bryan,Yunqiao Pu,Jessy Labbé, Dale A Pelletier,Nancy Engle, Jennifer L Morrell-Falvey,Jeremy Schmutz,Arthur J Ragauskas,Timothy J Tschaplinski

The New phytologist, (2020)

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Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution

Catherine L Peichel, Shaugnessy R McCann,Joseph A Ross, Alice F S Naftaly, James R Urton, Jennifer N Cech,Jane Grimwood,Jeremy Schmutz,Richard M Myers, David M Kingsley, Michael A White

Genome Biology, no. 1 (2020): 1-31

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Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway

Bryan T Piatkowski, Karn Imwattana, Erin A Tripp,David J Weston,Adam Healey,Jeremy Schmutz,A Jonathan Shaw

Molecular phylogenetics and evolution, pp.106904, (2020)

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Deeply conserved synteny resolves early events in vertebrate evolution

Oleg Simakov, Ferdinand Marlétaz,Jia-Xing Yue, Brendan O'Connell, Jerry Jenkins, Alexander Brandt, Robert Calef, Che-Huang Tung, Tzu-Kai Huang,Jeremy Schmutz,Nori Satoh,Jr-Kai Yu

Nature ecology & evolution, pp.1-11, (2020)

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A willow sex chromosome reveals convergent evolution of complex palindromic repeats

Ran Zhou, David Macaya-Sanz, Craig H Carlson,Jeremy Schmutz,Jerry W Jenkins,David Kudrna, Aditi Sharma,Laura Sandor,Shengqiang Shu,Kerrie Barry,Gerald A Tuskan,Tao Ma

Genome Biology, no. 1 (2020): 1-19

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Genetic Associations in Four Decades of Multi-environment Trials Reveal Agronomic Trait Evolution in Common Bean

Alice H MacQueen, Jeffrey W White,Rian Lee,Juan M Osorno,Jeremy Schmutz,Phillip N Miklas,Jim Myers,Phillip E McClean, Thomas E Juenger

Genetics, pp.1-60, (2020)

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Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism

Jin Zhang,Rongbin Hu,Avinash Sreedasyam, Travis M Garcia,Anna Lipzen, Mei Wang, Pradeep Yerramsetty,Degao Liu, Vivian Ng,Jeremy Schmutz,John C Cushman,Anne M Borland

GigaScience, no. 3 (2020)

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The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass

Albina Khasanova,John T Lovell, Jason Bonnette, Xiaoyu Weng,Jerry Jenkins,Yuko Yoshinaga,Jeremy Schmutz,Thomas E Juenger

Frontiers in plant science, (2019): 366

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A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis

Therese Mitros,Jessica B Lyons, Adam M Session,Jerry Jenkins, Shengquiang Shu,Taejoon Kwon,Maura Lane, Connie Ng,Timothy C Grammer,Mustafa K Khokha,Jane Grimwood,Jeremy Schmutz

Developmental biology, (2019)

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Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

Baosheng Wang,Julius P. Mojica, Nadeesha Perera,Cheng-Ruei Lee,John T. Lovell, Aditi Sharma, Catherine Adam,Anna Lipzen,Kerrie Barry,Daniel S. Rokhsar,Jeremy Schmutz,Thomas Mitchell-Olds

Genome Biology, no. 1 (2019): 1-1

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Genomic selection analyses reveal tradeoff between chestnut blight tolerance and genome inheritance from American chestnut ( Castanea dentata ) in ( C. dentata x C. mollissima ) x C. dentata backcross populations

Jared W. Westbrook, Qian Zhang, Mihir K. Mandal, Eric V. Jenkins, Laura E. Barth,Jerry W. Jenkins,Jane Grimwood,Jeremy Schmutz, Jason A. Holliday

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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

Noe Fernandez-Pozo, Fabian B Haas, Rabea Meyberg,Kristian K Ullrich,Manuel Hiss, Pierre-François Perroud, Sebastian Hanke, Viktor Kratz,Adrian F Powell, Eleanor F Vesty, Christopher G Daum, Matthew Zane

The Plant journal : for cell and molecular biology, (2019)

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