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Jan Gorodkin

Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Grønnegårdsvej 3, DK-1870 Frederiksberg, Denmark

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P135 MAJOR GENE REGULATORS AFFECTED IN COLON AND BLOOD OF DEXTRAN SODIUM SULFATE ACUTE COLITIS MURINE MODEL

Reza Yarani, Oana Palasca, Nadezhda Tsankova Doncheva, Christian Anthon, Bartosz Pilecki, Thomas Litman,Uffe Holmskov,Lars Juhl Jensen,Jan Gorodkin,Flemming Pociot

Inflammatory Bowel Diseases, no. 3 (2020)

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Good guide, bad guide: spacer sequence-dependent cleavage efficiency of Cas12a

Sjoerd C A Creutzburg, Wen Y Wu, Prarthana Mohanraju, Thomas Swartjes,Ferhat Alkan,Jan Gorodkin,Raymond H J Staals,John van der Oost

Nucleic acids research, (2020)

WOSBibtex

Transcriptome profiling of ulcerative colitis mouse model suggests biomarkers and therapeutic targets for human colitis

Reza Yarani, Oana Palasca, Nadezhda T. Doncheva,Christian Anthon, Bartosz Pilecki, Cecilie A. S. Svane,Aashiq H. Mirza, Thomas Litman,Uffe Holmskov,Claus Heiner Bang-Berthelsen, Mogens Vilien,Lars J. Jensen

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Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities

Daniel Sundfeld,George Teodoro, Jakob H. Havgaard,Jan Gorodkin, Alba C. M. A. Melo

Concurr. Comput. Pract. Exp., no. 10 (2019)

Cited by1EIBibtex

Special Issue: Computational Analysis of RNA Structure and Function

Genes, no. 1 (2019): 55

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Association of Functional Variants and Protein-to-Protein Physical Interactions of Human MutY homolog linked with Familial Adenomatous Polyposis and colorectal cancer Syndrome

Zainularifeen Abduljaleel, Jose R. Vazquez,Jan Gorodkin

bioRxiv, pp.552943, (2019)

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Sandwich cortical lamination and single-cell analysis decodes the developing spatial processing system

Yong Liu, Tobias Bergmann, Julie Lee, Ulrich Pfisterer, Louis-Francois Handfield, Yuki Mori, Andrea Asenjo-Martinez, Irene Lisa-Vargas,Stefan E Seemann, Jimmy Tsz Hang Lee, Nikolaos Patikis, Juan Miguel Peralvo Vidal

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P088 Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis

R Yarani, O Palasca, N Tsankova Doncheva,C Anthon, B Pilecki, T Litman,U Holmskov,L J Jensen,J Gorodkin,F Pociot,F Pociot

Journal of Crohns & Colitis, (2019)

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A splice-site variant in the lncRNA gene RP1-140A9.1 cosegregates in the large Volkmann cataract family

Hans Eiberg,Annemette F. Mikkelsen,Mads Bak,Niels Tommerup, Allan M. Lund,Anne Wenzel,Radhakrishnan Sabarinathan,Jan Gorodkin,Claus Heiner Bang-Berthelsen,Lars Hansen

Molecular Vision, (2019): 1-11

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Epigenetic and Transcriptomic Characterization of Pure Adipocyte Fractions From Obese Pigs Identifies Candidate Pathways Controlling Metabolism

Mette Juul Jacobsen,Jakob H Havgaard, Christian Anthon, Caroline M Junker Mentzel,Susanna Cirera, Poula Maltha Krogh, Sachin Pundhir,Peter Karlskov-Mortensen,Camilla S Bruun,Philippe Lesnik,Maryse Guerin,Jan Gorodkin

Frontiers in genetics, (2019): 1268

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RNAcentral: a hub of information for non coding RNA sequences

Blake A Sweeney,Anton I Petrov, Boris Burkov,Robert D Finn,Alex Bateman,Maciej Szymanski,Wojciech M Karlowski,Jan Gorodkin,Stefan E Seemann,Jamie J Cannone,Robin R Gutell, Petra Fey

Cited by50Bibtex

CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters

Ferhat Alkan,Anne Wenzel,Christian Anthon,Jakob Hull Havgaard,Jan Gorodkin

Genome biology, no. 1 (2018): 177

Cited by1WOSBibtex

Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles

Xiaoyong Pan,Lars Juhl Jensen,Jan Gorodkin

Bioinformatics (Oxford, England), (2018)

Cited by10WOSEIBibtex

Warburg Effect Metabolism Drives Neoplasia in a Drosophila Genetic Model of Epithelial Cancer

Teresa Eichenlaub,René Villadsen, Flávia C P Freitas, Diana Andrejeva, Blanca I Aldana, Hung Than Nguyen,Ole William Petersen,Jan Gorodkin,Héctor Herranz,Stephen M Cohen

Current biology : CB, (2018)

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IFN-λ and microRNAs are important modulators of the pulmonary innate immune response against influenza A (H1N2) infection in pigs

Louise Brogaard,Lars E Larsen,Peter M H Heegaard,Christian Anthon,Jan Gorodkin,Ralf Dürrwald,Kerstin Skovgaard

PloS one, no. 4 (2018)

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Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates

Xiaoyong Pan,Anne Wenzel,Lars Juhl Jensen,Jan Gorodkin

PloS one, no. 8 (2018)

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Cytoscape stringApp: Network analysis and visualization of proteomics data

Nadezhda T Doncheva,John H Morris,Jan Gorodkin,Lars J Jensen

Journal of proteome research, no. 2 (2018): 623-632

WOSBibtex

Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures

Radhakrishnan Sabarinathan,Christian Anthon,Jan Gorodkin,Stefan E Seemann

Genes, no. 12 (2018)

Cited by1WOSBibtex

TISSUES 2.0: an integrative web resource on mammalian tissue expression

Oana Palasca,Alberto Santos,Christian Stolte,Jan Gorodkin,Lars Juhl Jensen

Database, no. 2018 (2018)

Cited by3EIWOSBibtex

Identification and characterization of novel conserved RNA structures in Drosophila

Rebecca Kirsch,Stefan E Seemann,Walter L Ruzzo,Stephen M Cohen,Peter F Stadler,Jan Gorodkin

BMC genomics, no. 1 (2018): 899

Cited by3WOSBibtex

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