Jan Gorodkin

Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Grønnegårdsvej 3, DK-1870 Frederiksberg, Denmark

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Papers113 papers

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Transcriptome profiling of ulcerative colitis mouse model suggests biomarkers and therapeutic targets for human colitis

Reza Yarani, Oana Palasca, Nadezhda T. Doncheva,Christian Anthon, Bartosz Pilecki, Cecilie A. S. Svane,Aashiq H. Mirza, Thomas Litman,Uffe Holmskov,Claus Heiner Bang-Berthelsen, Mogens Vilien,Lars J. Jensen

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Good guide, bad guide: spacer sequence-dependent cleavage efficiency of Cas12a

Sjoerd C A Creutzburg, Wen Y Wu, Prarthana Mohanraju, Thomas Swartjes,Ferhat Alkan,Jan Gorodkin,Raymond H J Staals,John van der Oost

Nucleic acids research, (2020)

WOSBibtex

P135 MAJOR GENE REGULATORS AFFECTED IN COLON AND BLOOD OF DEXTRAN SODIUM SULFATE ACUTE COLITIS MURINE MODEL

Reza Yarani, Oana Palasca, Nadezhda Tsankova Doncheva, Christian Anthon, Bartosz Pilecki, Thomas Litman,Uffe Holmskov,Lars Juhl Jensen,Jan Gorodkin,Flemming Pociot

Gastroenterology, no. 3 (2020): S51

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RNAcentral 2021: secondary structure integration, improved sequence search and new member databases

Blake A Sweeney,Anton I Petrov, Carlos E Ribas,Robert D Finn,Alex Bateman,Maciej Szymanski,Wojciech M Karlowski,Stefan E Seemann,Jan Gorodkin,Jamie J Cannone,Robin R Gutell, Simon Kay

Nucleic Acids Research, (2020)

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Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities

Daniel Sundfeld,George Teodoro, Jakob H. Havgaard,Jan Gorodkin, Alba C. M. A. Melo

Concurr. Comput. Pract. Exp., no. 10 (2019)

Cited by1EIBibtex

Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229]

Blake A. Sweeney,Anton I. Petrov, Boris Burkov,Robert D. Finn,Alex Bateman,Maciej Szymanski,Wojciech M. Karlowski,Jan Gorodkin,Stefan E. Seemann,Jamie J. Cannone,Robin R. Gutell,Petra Fey

Nucleic Acids Research, (2019)

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RNAcentral: a hub of information for non coding RNA sequences

Blake A Sweeney,Anton I Petrov, Boris Burkov,Robert D Finn,Alex Bateman,Maciej Szymanski,Wojciech M Karlowski,Jan Gorodkin,Stefan E Seemann,Jamie J Cannone,Robin R Gutell, Petra Fey

Cited by50Bibtex

The BSGatlas: An enhanced annotation of genes and transcripts for the Bacillus subtilis genome with improved information access

Adrian Sven Geissler,Christian Anthon, Enrique González-Tortuero, Line Dahl Poulsen, Thomas Beuchert Kallehauge, Stefan Ernst Seemann,Jeppe Vinther,Jan Gorodkin

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Special Issue: Computational Analysis of RNA Structure and Function

Jan Gorodkin

Genes, no. 1 (2019): 55

Bibtex

Sandwich cortical lamination and single-cell analysis decodes the developing spatial processing system

Yong Liu, Tobias Bergmann, Julie Lee, Ulrich Pfisterer, Louis-Francois Handfield, Yuki Mori, Andrea Asenjo-Martinez, Irene Lisa-Vargas,Stefan E Seemann, Jimmy Tsz Hang Lee, Nikolaos Patikis, Juan Miguel Peralvo Vidal

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P088 Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis