James C. Schaff - Richard D Berlin Ctr Cell Anal & Modeling, Univ Connecticut

基本信息

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Bio

JAMES C. SCHAFF is Assistant Professor of Cell Biology at the University of Connecticut Health Center. He is the lead software developer for the Virtual Cell project. His e-mail address is .

Research Interests

Papers共 45 篇Author StatisticsCo-AuthorSimilar Experts

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Using SED-ML for Reproducible Curation: Verifying BioModels Across Multiple Simulation Engines

Lucian Smith,Rahuman S Malik-Sheriff,Tung V N Nguyen,Henning Hermjakob,Jonathan Karr,Bilal Shaikh, Logan Drescher,Ion I Moraru,James C Schaff,Eran Agmon, Alexander A Patrie,Michael L Blinov, Joseph L Hellerstein,Elebeoba E May,David P Nickerson,John H Gennari,Herbert M Sauro

bioRxiv the preprint server for biology (2025)

Cited0Views0WOSBibtex

From FAIR to CURE: Guidelines for Computational Models of Biological Systems

Herbert M Sauro,Eran Agmon,Michael L Blinov,John H Gennari,Joe Hellerstein, Adel Heydarabadipour,Peter Hunter,Bartholomew E Jardine, Elebeoba May,David P Nickerson,Lucian P Smith,Gary D Bader, Frank Bergmann,Patrick M Boyle,Andreas Dräger,James R Faeder,Song Feng,Juliana Freire,Fabian Fröhlich,James A Glazier,Thomas E Gorochowski,Tomas Helikar,Stefan Hoops,Princess Imoukhuede,Sarah M Keating,Matthias Konig,Reinhard Laubenbacher,Leslie M Loew,Carlos F Lopez,William W Lytton, Andrew McCulloch,Pedro Mendes,Chris J Myers, Jerry G Myers,Lealem Mulugeta,Anna Niarakis,David D van Niekerk,Brett G Olivier, Alexander A Patrie,Ellen M Quardokus,Nicole Radde,Johann M Rohwer,Sven Sahle,James C Schaff,T J Sego, Janis Shin,Jacky L Snoep,Rajanikanth Vadigepalli, H Steve Wiley,Dagmar Waltemath,Ion Moraru

ArXiv (2025)

Cited0Views0WOSBibtex

SBML Level 3 Package: Spatial Processes, Version 1, Release 1

James C. Schaff,Anuradha Lakshminarayana,Robert F. Murphy,Frank T. Bergmann,Akira Funahashi,Devin P. Sullivan,Lucian P. Smith

JOURNAL OF INTEGRATIVE BIOINFORMATICS（2023）

Cited3Views0EIBibtex

Virtual Cell Modeling and Simulation Software

Michael L. Blinov,Ion I. Moraru,James C. Schaff,Leslie M. Loew

BIOPHYSICAL JOURNAL（2023）

Cited201Views0EIWOSBibtex

201

BioSimulators: a Central Registry of Simulation Engines and Services for Recommending Specific Tools

Bilal Shaikh,Lucian P. Smith,Dan Vasilescu,Gnaneswara Marupilla,Michael Wilson,Eran Agmon,Henry Agnew,Steven S. Andrews,Azraf Anwar,Moritz E. Beber,Frank T. Bergmann,David Brooks,Lutz Brusch,Laurence Calzone,Kiri Choi,Joshua Cooper,John Detloff,Brian Drawert,Michel Dumontier,G. Bard Ermentrout,James R. Faeder,Andrew P. Freiburger,Fabian Frohlich,Akira Funahashi,Alan Garny,John H. Gennari,Padraig Gleeson,Anne Goelzer,Zachary Haiman,Jan Hasenauer,Joseph L. Hellerstein,Henning Hermjakob,Stefan Hoops,Jon C. Ison,Diego Jahn,Henry Jakubowski, Ryann Jordan,Matus Kalas,Matthias Koenig,Wolfram Liebermeister,Rahuman S. Malik Sheriff, Synchon Mandal,Robert McDougal,J. Kyle Medley,Pedro Mendes,Robert Mueller,Chris J. Myers,Aurelien Naldi,Tung V. N. Nguyen,David P. Nickerson,Brett G. Olivier,Drashti Patoliya,Loic Pauleve,Linda R. Petzold, Ankita Priya,Anand K. Rampadarath,Johann M. Rohwer,Ali S. Saglam,Dilawar Singh,Ankur Sinha,Jacky Snoep,Hugh Sorby,Ryan Spangler,Joern Starruss,Payton J. Thomas,David van Niekerk,Daniel Weindl,Fengkai Zhang,Anna Zhukova,Arthur P. Goldberg,James C. Schaff,Michael L. Blinov,Herbert M. Sauro,Ion I. Moraru,Jonathan R. Karr

Nucleic Acids Research（2022）

Cited13Views0EIWOSBibtex

SBML Level 3: an Extensible Format for the Exchange and Reuse of Biological Models

Sarah M. Keating,Dagmar Waltemath,Matthias Koenig,Fengkai Zhang,Andreas Draeger,Claudine Chaouiya,Frank T. Bergmann,Andrew Finney,Colin S. Gillespie,Tomas Helikar,Stefan Hoops,Rahuman S. Malik-Sheriff,Stuart L. Moodie,Ion I. Moraru,Chris J. Myers,Aurelien Naldi,Brett G. Olivier,Sven Sahle,James C. Schaff,Lucian P. Smith,Maciej J. Swat,Denis Thieffry,Leandro Watanabe,Darren J. Wilkinson,Michael L. Blinov,Kimberly Begley,James R. Faeder,Harold F. Gomez, Thomas M. Hamm, Yuichiro Inagaki, Wolfram Liebermeister,Allyson L. Lister, Daniel Lucio,Eric Mjolsness,Carole J. Proctor,Karthik Raman,Nicolas Rodriguez,Clifford A. Shaffer,Bruce E. Shapiro,Joerg Stelling,Neil Swainston,Naoki Tanimura,John Wagner,Martin Meier-Schellersheim,Herbert M. Sauro,Bernhard Palsson,Hamid Bolouri,Hiroaki Kitano,Akira Funahashi,Henning Hermjakob,John C. Doyle,Michael Hucka

MOLECULAR SYSTEMS BIOLOGYno. 8 (2020)

Cited150Views0WOSBibtex

150

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Michael Hucka,Frank T. Bergmann,Stefan Hoops,Sarah M. Keating,Sven Sahle,James C. Schaff,Lucian P. Smith,Darren J. Wilkinson

Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics（2019）

Cited124Views0EIWOSBibtex

124

Center for Reproducible Biomedical Modeling

Herbert M Sauro,Michael Blinov,Daniel Cook,John H Gennari,Arthur Goldberg,Jonathan Karr,Ion Moraru,David Nickerson,James C Schaff

user-5ebe282a4c775eda72abcdce（2018）

Cited0Views0Bibtex

Spatial Modeling Of Cellular Systems With Vcell

Boris M. Slepchenko,James C. Schaff,Leslie M. Loew

QUANTITATIVE BIOLOGY: THEORY, COMPUTATIONAL METHODS, AND MODELSpp.455-468, (2018)

Cited0Views0Bibtex

Center for Reproducible Biomedical Modeling

Herbert M. Sauro,Michael L. Blinov, Daniel W. Cook, JohnH. Gennari, Arthur S. Goldberg,Jonathan R. Karr, I Moraru,David Nickerson,James C. Schaff

openalex（2018）

Cited0Views0Bibtex

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