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Jakob Bunkenborg

Department of Biochemistry and Molecular Biology, University of Southern Denmark, DK-5230 Odense, Denmark

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Genomic adaptations of the green alga Dunaliella salina to life under high salinity

Jurgen E. W. Polle, Sara Calhoun, Zaid McKie-Krisberg,Simon Prochnik, Peter Neofotis,Won C. Yim, Leyla T. Hathwaik,Jerry Jenkins,Henrik Molina,Jakob Bunkenborg,V Grigoriev Igor,Kerrie Barry

Algal Research, (2020): 101990

Bibtex

Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications

Søren Heissel, Sigurd J Frederiksen,Jakob Bunkenborg,Peter Højrup

PloS one, no. 6 (2019)

WOSBibtex

Evaluation of spectral libraries and sample preparation for DIA-LC-MS analysis of host cell proteins: A case study of a bacterially expressed recombinant biopharmaceutical protein

Søren Heissel,Jakob Bunkenborg,Max Per Kristiansen, Anne Fich Holmbjerg,Marie Grimstrup,Ejvind Mørtz, Thomas Kofoed,Peter Højrup

Protein expression and purification, (2018)

Cited by1WOSBibtex

Discrimination of isoleucine and leucine by dimethylation-assisted MS3

Sheila Maibom-Thomsen, Søren Heissel,Ejvind Mørtz,Peter Højrup,Jakob Bunkenborg

ANALYTICAL CHEMISTRY, no. 15 (2018): 9055-9059

WOSBibtex

DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy

Martin V Bennetzen,Martin Kosar,Jakob Bunkenborg,Mark Ronald Payne,Jirina Bartkova,Mikael S Lindström,Jiri Lukas,Jens S Andersen,Jiri Bartek,Dorthe Helena Larsen

Cell cycle (Georgetown, Tex.), (2018)

WOSBibtex

Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18

Juergen E W Polle,Kerrie Barry,John Cushman,Jeremy Schmutz, Duc Tran,Leyla T Hathwaik,Won C Yim,Jerry Jenkins, Zaid McKie-Krisberg,Simon Prochnik,Erika Lindquist, Rhyan B Dockter

Genome announcements, no. 43 (2017)

Cited by9WOSBibtex

Covalent perturbation as a tool for validation of identifications and PTM mapping applied to bovine alpha‐crystallin

Jakob Bunkenborg,Lasse G Falkenby,Lea M Harder,Henrik Molina

Proteomics, (2015)

Bibtex

The C. elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm prior to incorporation into the PCM matrix

Oliver Wueseke,Jakob Bunkenborg,Jakob Bunkenborg,Marco Y. Hein,Andrea Zinke,Valeria Viscardi,Jeffrey B. Woodruff,Karen Oegema,Matthias Mann,Jens S. Andersen,Anthony A. Hyman

Molecular Biology of the Cell, (2014)

Bibtex

Glycopeptide Enrichment Using a Combination of ZIC-HILIC and Cotton Wool for Exploring the Glycoproteome of Wheat Flour Albumins

Per Hagglund,Christine Finnie,Jakob Bunkenborg,Birte Svensson, Susanne Jacobsen,Plaipol Dedvisitsakul

Journal of Proteome Research, (2014)

Cited by1Bibtex

Cutting Edge Proteomics: Benchmarking of Six Commercial Trypsins

Henrik Molina, Guadalupe Espadas,Jakob Bunkenborg

Journal of Proteome Research, (2013)

Cited by1Bibtex

The human cap-binding complex is functionally connected to the nuclear RNA exosome

Peter Refsing Andersen,Michal Domanski,Maiken S Kristiansen,Helena Storvall,Evgenia Ntini,Celine Verheggen,Aleks Schein,Jakob Bunkenborg,Ina Poser,Marie Hallais,Rickard Sandberg,Anthony A Hyman

Nature Structural & Molecular Biology, (2013)

Cited by109Bibtex

Andrea Becker,Jakob Bunkenborg,Tobias Eisenberg,Lea M Harder,Sabrina Schroeder,Frank Madeo,Jens S Andersen,Jorn Dengjel

Autophagy, (2012)

Bibtex

by quantitative proteomic analysis and genetic screens

Jorn Dengjel, Maria Hoyerhansen, M O Nielsen, Tobias Eisenberg, Lea M Harder, Soren Schandorff,Thomas Farkas,Thomas Kirkegaard, Sabrina Schroeder, Katja Vanselow, Emma Lundberg, Anders R Kristensen

(2012)

Bibtex

SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production

Tadahiro Shimazu,Matthew D Hirschey,Lan Hua,Kristin E Dittenhafer-Reed,Bjoern Schwer,David B Lombard,Yu Li,Jakob Bunkenborg,Frederick W Alt,John M Denu,Matthew P Jacobson,Eric Verdin

Cell Metabolism, no. 6 (2010): 654-661

Cited by316WOSEIBibtex

The minotaur proteome: avoiding cross-species identifications deriving from bovine serum in cell culture models

Jakob Bunkenborg,Guadalupe Espadas García,Marcia Ivonne Peña Paz,Jens S Andersen,Henrik Molina

Proteomics, no. 16 (2010): 3040-3044

Cited by37WOSBibtex

Identification of thioredoxin target disulfides in proteins released from barley aleurone layers

Per Hägglund,Jakob Bunkenborg,Fen Yang,Lea Mørch Harder,Christine Finnie,Birte Svensson

Journal of Proteomics, no. 6 (2010): 1133-1136

Cited by15WOSEIBibtex

Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast

Pavel Gromov,Irina Gromova,Jakob Bunkenborg,Teresa Cabezon,José M A Moreira,Vera Timmermans-Wielenga,Peter Roepstorff,Fritz Rank,Julio E Celis

Molecular oncology, no. 1 (2010): 65-89

Cited by51WOSEIBibtex

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

Peter Mortensen,Joost W Gouw,Jesper V Olsen,Shao-En Ong,Kristoffer T G Rigbolt,Jakob Bunkenborg,Jürgen Cox,Leonard J Foster,Albert J R Heck,Blagoy Blagoev,Jens S Andersen,Matthias Mann

Journal of proteome research, no. 1 (2010): 393-403

Cited by252WOSBibtex

118 Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast

P. Gromov,I. Gromova,J. Bunkenborg,T. Cabezon,J. M. A. Moreira,V. Timmermans-Wielenga,P. Roepstorff,F. Rank,J. E. Celis

Ejc Supplements, no. 5 (2010): 31-31

Cited by4Bibtex

Identification of thioredoxin disulfide targets using a quantitative proteomics approach based on isotope-coded affinity tags

Per Hägglund,Jakob Bunkenborg,Kenji Maeda,Birte Svensson

Journal of proteome research, no. 12 (2008): 5270-5276

Cited by67WOSBibtex

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