Jean Thierry-Mieg

National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD 20894, USA

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Papers53 papers

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Magic-BLAST, an accurate RNA-seq aligner for long and short reads

Grzegorz M Boratyn,Jean Thierry-Mieg,Danielle Thierry-Mieg,Ben Busby,Thomas L Madden

BMC Bioinformatics, no. 1 (2019): 1-19

Cited by15WOSEIBibtex

XOR_p A maximally intertwined p-classes problem used as a benchmark with built-in truth for neural networks gradient descent optimization

Danielle Thierry-Mieg,Jean Thierry-Mieg

arXiv: Learning, (2018)

EIBibtex

Magic-BLAST, a accurate DNA and RNA-seq aligner for long and short reads

Grzegorz M Boratyn,Jean Thierry-Mieg,Danielle Thierry-Mieg,Ben Busby,Thomas L. Madden

bioRxiv, pp.390013-38, (2018)

Bibtex

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)

Xinxia Peng,Jean Thierry-Mieg,Danielle Thierry-Mieg,Andrew Nishida,Lenore Pipes,Marjan Bozinoski,Matthew J Thomas,Sara Kelly,Jeffrey M Weiss,Muthuswamy Raveendran,Donna Muzny,Richard A Gibbs

Nucleic Acids Research, no. Database issue (2015): D737-42

Cited by35WOSEIBibtex

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Zhenqiang Su, Pawel P łabaj,Sheng Li,Jean Thierrymieg,Danielle Thierrymieg,Wei Shi,Charles Wang,Gary P Schroth,Robert A Setterquist,J Thompson,Wendell D Jones,Wenzhong Xiao

Nature Biotechnology, (2014)

Cited by393Bibtex

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Zhenqiang Su, Reagan Kelly,Joshua Xu,Huixiao Hong,Ching-Wei Chang,Tao Chen,Hong Fang,James C Fuscoe,Weigong Ge, Binsheng Gong, Bridgett Green,Lei Guo

Nature Biotechnology, no. 9 (2014): 903-914

Cited by343WOSNATUREBibtex

Detecting and correcting systematic variation in large-scale RNA sequencing data

Sheng Li,Pawel P łabaj,Paul Zumbo,Peter Sykacek,Wei Shi,Leming Shi,John Phan,Poyen Wu,May Wang,Charles Wang,Danielle Thierrymieg,Jean Thierrymieg

Nature Biotechnology, (2014)

Cited by102Bibtex

Detecting and correcting systematic variation in large-scale RNA sequencing data

Sheng Li,Paweł P Łabaj,Paul Zumbo,Paul Zumbo,Christopher E Mason,Paul Zumbo,Peter Sykacek,David P Kreil,Wei Shi,Leming Shi,John Phan,Po-Yen Wu

Nature biotechnology, no. 9 (2014): 888-895

Cited by97WOSNATUREBibtex

The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics

Lenore Pipes,Sheng Li,Marjan Bozinoski,Robert Palermo,Xinxia Peng,Phillip Blood,Sara Kelly,Jeffrey M Weiss,Jean Thierry-Mieg,Danielle Thierry-Mieg,Paul Zumbo,Ronghua Chen

Nucleic Acids Research, no. Database issue (2013): D906-14

Cited by46WOSEIBibtex

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Leming Shi,Gregory A Campbell,Wendell D Jones,Fabien Campagne,Zhining Wen,Stephen J Walker,Zhenqiang Su,Tzuming Chu,Federico Goodsaid,Lajos Pusztai,John D Shaughnessy,Andre Oberthuer

Nature biotechnology, no. 8 (2010): 827-838

Cited by660WOSSCOPUSNATUREBibtex

Microarray Gene Expression: The Effects of Varying Certain Measurement Conditions

W S Liggett, Jean Lozach,Anne Bergstrom Lucas, R L Peterson,Marc L Salit,Danielle Thierrymieg,Jean Thierrymieg,Russell D Wolfinger

(2009)

Bibtex

Analysis of interleukin-21-induced Prdm1 gene regulation reveals functional cooperation of STAT3 and IRF4 transcription factors

Hyokjoon Kwon,Danielle Thierry-Mieg,Jean Thierry-Mieg,Hyoung-Pyo Kim,Jangsuk Oh,Chainarong Tunyaplin,Sebastian Carotta,Colleen E Donovan,Matthew L Goldman,Prafullakumar Tailor,Keiko Ozato,David E Levy

Immunity, no. 6 (2009): 941-952

Cited by273WOSEIBibtex

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

Shrinivasrao P Mane,Clive Evans,Kristal L Cooper,Oswald R Crasta,Otto Folkerts,Stephen K Hutchison,Timothy T Harkins,Danielle Thierry-Mieg,Jean Thierry-Mieg,Roderick V Jensen

BMC Genomics, no. 1 (2009): 264-264

Cited by151WOSBibtex

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Chisato Yamasaki,Katsuhiko Murakami,Yasuyuki Fujii,Yoshiharu Sato, E Harada,Junichi Takeda, Takayuki Taniya, Ryuichi Satake,Shingo Kikugawa, M Shimada,Motohiko Tanino,Brian D Halligan

Nucleic Acids Research, (2008)

Cited by66Bibtex

Quantum construction of a unitary SU(2/1) model of the electro-weak interactions with 2 Higgs doublets

Jean Thierry-Mieg

(2008)

Bibtex

AceC, a C programmer's interface to the AceDB database system

Mark Sienkiewicz,Jean Thierry-Mieg

(2007)

Bibtex

AceView: a comprehensive cDNA-supported gene and transcripts annotation

Danielle Thierry-Mieg,Jean Thierry-Mieg

Genome biology, no. Suppl 1 (2006): S12.1-14

Cited by459WOSBibtex

Using RNA sample titrations to assess microarray platform performance and normalization techniques

Richard Shippy,Stephanie Fulmer-Smentek,Roderick V Jensen,Wendell D Jones,Paul K Wolber,Charles D Johnson,P Scott Pine,Cecilie Boysen,Xu Guo,Eugene Chudin,Yongming Andrew Sun,James C Willey

Nature biotechnology, no. 9 (2006): 1123-1131

Cited by174WOSNATUREBibtex

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