Ilana Solomon, Jenny Shen, Adem Albayrak,Gil Alterovitz, Ethan Cerami, Catherine Del Vecchio Fitz,Rachel A. Freedman, Lisa Lopez,Lynette M. Sholl, Eliezer VanAllen,Sarah A McGraw,Stacy W. Gray

Journal of Clinical Oncology, (2018): 1532-1532

Bibtex

Enabling precision medicine via standard communication of HTS provenance, analysis, and results.

Gil Alterovitz, Dennis Dean,Carole Goble, Michael R Crusoe,Stian Soiland-Reyes, Amanda Bell, Anais Hayes, Anita Suresh, Anjan Purkayastha, Charles H King, Dan Taylor, Elaine Johanson

PLoS biology, no. 12 (2018): 3000099

WOSBibtex

SMART Cancer Navigator: A Framework for Implementing ASCO Workshop Recommendations to Enable Precision Cancer Medicine.

Jeremy L Warner, Ishaan Prasad, Makiah Bennett, Monica Arniella, Alicia Beeghly-Fadiel,Kenneth D Mandl,Gil Alterovitz

JCO precision oncology, no. 2 (2018): 1-14

WOSBibtex

Wrapper-based gene selection with Markov blanket.

Aiguo Wang,Ning An,Jing Yang, Guilin Chen,Lian Li,Gil Alterovitz

Comp. in Bio. and Med., no. C (2017): 11-23

Cited by7EIWOSBibtex

SNP by SNP by environment interaction network of alcoholism.

Amin Zollanvari,Gil Alterovitz

BMC Systems Biology, no. 3 (2017): 19:1-19:11

Cited by4EIBibtex

HLA-B*51:01 is strongly associated with clindamycin-related cutaneous adverse drug reactions.

Y Yang,S Chen,F Yang,L Zhang,G Alterovitz, H Zhu,J Xuan, X Yang,H Luo, J Mu, L He,X Luo

The pharmacogenomics journal, no. 6 (2017): 501-505

Cited by3WOSBibtex

Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization.

Jiaoyun Yang, Haipeng Wang,Huitong Ding,Ning An,Gil Alterovitz

BMC Bioinformatics, no. 1 (2017): 47:1-47:10

Cited by3EIWOSBibtex

Overcoming the Straw Man Effect in Oncology: Visualization and Ranking of Chemotherapy Regimens Using an Information Theoretic Approach.

Jeremy L Warner, Peter C Yang,Gil Alterovitz

JCO clinical cancer informatics, no. 1 (2017): 1-9

WOSBibtex

Biobrick chain recommendations for genetic circuit design.

Jiaoyun Yang,Song Yu, Bowen Gong,Ning An,Gil Alterovitz

Comp. in Bio. and Med., (2017): 31-39

Cited by1EIWOSBibtex

Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Gil Alterovitz, Dennis A. Dean,Carole A. Goble, Michael R. Crusoe,Stian Soiland-Reyes, Amanda Bell, Anais Hayes, Charles Hadley King, Elaine Johanson, Elaine E. Thompson,Eric Donaldson, Hsinyi S Tsang

bioRxiv, pp.191783, (2017)

Cited by1Bibtex

Gene expression prediction using low-rank matrix completion.

Arnav Kapur,Kshitij Marwah,Gil Alterovitz

BMC Bioinformatics, no. 1 (2016): 243

Cited by20EIWOSBibtex

A Partial Correlation Statistic Structure Learning Algorithm Under Linear Structural Equation Models.

Jing Yang,Ning An,Gil Alterovitz

IEEE Trans. Knowl. Data Eng., no. 10 (2016): 2552-2565

Cited by3EIBibtex

SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care.

Jeremy L. Warner,Matthew J. Rioth,Kenneth D. Mandl,Joshua C. Mandel,David A. Kreda,Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao,Gil Alterovitz

JAMIA, no. 4 (2016): 701-710

Cited by25EIWOSBibtex

Classification of hospital acquired complications using temporal clinical information from a large electronic health record.

Jeremy L. Warner,Peijin Zhang,Jenny Liu,Gil Alterovitz

J. Biomed. Informatics, (2016): 209-217

Cited by17WOSEIBibtex

Predicting hypertension without measurement: A non-invasive, questionnaire-based approach

Aiguo Wang,Ning An, Guilin Chen,Lian Li,Gil Alterovitz

Expert Systems with Applications, no. 21 (2015)

Cited by17EIBibtex

Predicting hypertension without measurement

Aiguo Wang,Ning An,Guilin Chen,Lian Li,Gil Alterovitz

Expert Systems with Applications: An International Journal, no. 21 (2015): 7601-7609

EIBibtex

All the World's a Stage: Facilitating Discovery Science and Improved Cancer Care through the Global Alliance for Genomics and Health.

Lawler Mark,Siu Lillian L,Rehm Heidi L,Chanock Stephen J,Alterovitz Gil,Burn John,Calvo Fabien,Lacombe Denis,Teh Bin Tean,North Kathryn N,Sawyers Charles L, Null Null

Cancer discovery, no. 11 (2015): 1133-1136

Cited by15WOSBibtex

All the World's a Stage: Facilitating Discovery Science and Improved Cancer Care through the Global Alliance for Genomics and Health.

Mark Lawler,Lillian L Siu,Heidi L Rehm,Stephen J Chanock,Gil Alterovitz,John Burn,Fabien Calvo,Denis Lacombe,Bin Tean Teh,Kathryn N North,Charles L Sawyers

(2015)

Cited by1Bibtex

SMART on FHIR Genomics: facilitating standardized clinico-genomic apps.

Gil Alterovitz,Jeremy L Warner,Peijin Zhang, Yishen Chen,Mollie Ullmancullere,David A Kreda,Isaac S Kohane

JAMIA, no. 6 (2015): 1173-1178

Cited by72EIBibtex

Accelerating wrapper-based feature selection with K-nearest-neighbor

Aiguo Wang,Ning An, Guilin Chen,Lian Li,Gil Alterovitz

Knowledge-Based Systems, no. C (2015): 81-91

Cited by44EIBibtex

Accelerating incremental wrapper based gene selection with K-Nearest-Neighbor

Aiguo Wang,Ning An, Guilin Chen,Lian Li,Gil Alterovitz

BIBM, pp.21-23, (2014)

Cited by5EIWOSBibtex

Amygdala response to emotional faces accurately discriminates adults with self-reported histories of maltreatment from unexposed controls

Steven B Lowen,Gil Alterovitz,C A Anderson,Kyoko Ohashi,Yang Li, Alaptagin Khan,Elizabeth Bolger,Cynthia E Mcgreenery, Hannah Mccormack,Martin H Teicher

(2014)

Bibtex

Chapter 8 - Bayesian Methods in Biomedical Data Analysis

Hsunhsien Chang,Gil Alterovitz

(2014)

Bibtex

Incremental wrapper based gene selection with Markov blanket

Aiguo Wang,Ning An, Guilin Chen,Jing Yang,Lian Li,Gil Alterovitz

BIBM, pp.74-79, (2014)

Cited by12EIWOSBibtex

Switching variability index based multiple strategy CFAR detector

Yang,Li,Zhenyuan,Ji,Bingfei,Gil,Alterovitz

Systems Engineering and Electronics, Journal of , no. 4 (2014): 580-587

Cited by1EIWOSBibtex

From Bayesian modeling to genomic mapping: Biologic validity of predictive single nucleotide polymorphism networks for chemotherapy-related side effects.

Stephen T. Sonis,Lee Steven Schwartzberg, Susan M Weidner,Gil Alterovitz

Journal of Clinical Oncology, (2013): 9535-9535

Bibtex

Constructing a Novel Cancer Ontology.

Michael Gao,Jeremy L. Warner,Peter Yang,Gil Alterovitz

AMIA, (2013)

EIBibtex

Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information.

Jeremy L. Warner,Quan Ding,David A. Kreda,Zi'ou Zheng,Keshav Gupta,Joshua C. Denny,Gil Alterovitz

AMIA, (2013)

EIBibtex

Analytic Approaches to Phenotypic Complexity.

Jeremy L. Warner,Joshua C. Denny,David A. Kreda,Gil Alterovitz

MedInfo, pp.1267, (2013)

Cited by1EIBibtex

Predicting Risk of Chemotherapy-induced Side Effects in Patients With Colon Cancer With Single-Nucleotide Polymorphism (SNP) Bayesian Networks (BNs)

Stephen T Sonis,Lee S Schwartzberg,Mark S Walker, Susan M Weidner,Gil Alterovitz

(2013)

Cited by1Bibtex

The Role of Genes on the Metabolism of Chemotherapeutic Agents and Their Impact on Toxicity

Young S Yi,Gil Alterovitz

(2013)

Bibtex

Causal discovery based on healthcare information.

Jing Yang,Ning An,Gil Alterovitz,Lian Li,Aiguo Wang

BIBM, no. null (2013): 71-73

Cited by1WOSSCOPUSEIBibtex

Automated synthesis and visualization of a chemotherapy treatment regimen network.

Jeremy Warner,Peter Yang,Gil Alterovitz

MedInfo, (2013): 62-66

Cited by3WOSEIBibtex

Sharing of Genomic Information: Perspectives from Stakeholders.

Jeremy L. Warner,Gil Alterovitz,Joshua C. Denny,Robert Fassett,Kevin Hughes

AMIA, (2013)

EIBibtex

Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma.

Jeremy L. Warner,Gil Alterovitz,Kelly Bodio,Robin M. Joyce

JAMIA, no. 4 (2013): 696-699

EIBibtex

Genomic studies of GVHD|[mdash]|lessons learned thus far

C Ting,Gil Alterovitz, A Merlob,Reza Abdi

Bone Marrow Transplantation, no. 1 (2012): 4-9

Cited by6WOSNATUREBibtex

Abstract P1-15-12: Single Nucleotide Polymorphism (SNP) Bayesian networks (BNs) Predict Risk of Chemotherapy-Induced Side Effects in Patients with Breast Cancer Receiving Dose Dense (DD) Doxorubicin/Cyclophosphamide Plus Paclitaxel (AC+T)

L S Schwartzberg,Stephen T Sonis, Walker, Susan M Weidner,Gil Alterovitz

Cancer Research, (2012)

Cited by1Bibtex

SNP-Based Bayesian Networks Define Oral Mucositis Risk in Patients Receiving Stomatotoxic Conditioning Regimens for Autologous Hematopoietic Stem Cell Transplantation

Stephen T. Sonis,Joseph H. Antin,Gil Alterovitz

Blood, no. 21 (2012): 735-735

Bibtex

Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities.

Chang F. Quo,Chanchala Kaddi,John H. Phan,Amin Zollanvari,Mingqing Xu,May D. Wang,Gil Alterovitz

Briefings in Bioinformatics, no. 4 (2012): 430-445

Cited by16EIWOSBibtex

Knowledge-Based Bioinformatics: From analysis to interpretation

Gil Alterovitz,Marco Ramoni

Knowledge-Based Bioinformatics: From analysis to interpretation, (2010)

Cited by33EIBibtex

Introduction to the special issue on information theory in molecular biology and neuroscience

Olgica Milenkovic,Gil Alterovitz,Gerard Battail,Todd P. Coleman,Joachim Hagenauer,Sean P. Meyn,Nathan Price,Marco F. Ramoni,Ilya Shmulevich,Wojciech Szpankowski

IEEE Transactions on Information Theory, no. 2 (2010): 649-652

Cited by19EIWOSBibtex

Mapping transcription mechanisms from multimodal genomic data.

Hsun-Hsien Chang,Michael McGeachie,Gil Alterovitz,Marco F Ramoni

BMC Bioinformatics, no. Suppl 9 (2010): S2-S2

Cited by83WOSEIBibtex

The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Gil Alterovitz,Taro Muso,Marco F Ramoni

Briefings in Bioinformatics, no. 1 (2010): 80-95

Cited by26WOSEIBibtex

Introduction to the special issue on information theory in molecular biology and neuroscience

Gil Alterovitz,Olgica Milenkovic,Gerard Battail,Joachim Hagenauer,Sean P Meyn,Nathan D Price,Marco F Ramoni,Ilya Shmulevich,Wojciech Szpankowski,Todd P Coleman

(2010)

Cited by20Bibtex

SCV-07 treatment leads to alterations in VEGF, MIF, IL-1alpha, and MIP-1beta levels in patients with head and neck cancer

Cynthia W Tuthill,Israel Rios,Katharina Modelska,Stephen T Sonis,Edward G Fey,Gil Alterovitz,Joel B Epstein

Clinical Cancer Research, (2010)

Bibtex

Proteomics.

Benjamin A Garcia, Helen J Cooper,Pieter C Dorrestein,Kai Tang,Beatrix M Ueberheide

Journal of biomedicine & biotechnology, (2010): 453045-453045

Cited by9WOSBibtex

Automation in proteomics and genomics : an engineering case-based approach

Gil Alterovitz, Roseann Benson,Marco F Ramoni

(2009)

Cited by5Bibtex

BIOMOLECULAR NETWORKS: FROM ANALYSIS TO SYNTHESIS – SESSION INTRODUCTION

Jonathan M Dreyfuss,Judith A Blake,Gil Alterovitz,Marco F Ramoni, Drew Endy

(2009)

Bibtex

Trends in Automation for Genomics and Proteomics

Gil Alterovitz, Roseann Benson,Marco F Ramoni,Dmitriy Sonkin

(2009)

Bibtex

High-throughput discovery and characterization of fetal protein trafficking in the blood of pregnant women

Jill L. Maron,Gil Alterovitz,Marco Ramoni,Kirby L. Johnson,Diana W. Bianchi

Proteomics Clinical Applications, no. 12 (2009)

WOSBibtex

Automated programming for bioinformatics algorithm deployment.

Gil Alterovitz,Adnaan Jiwaji,Marco F Ramoni

Bioinformatics, no. 3 (2008): 450-451

Cited by4WOSEIBibtex

An artificial intelligence tool to predict fluid requirement in the intensive care unit: a proof-of-concept study

Leo Anthony Celi,L Christian Hinske,Gil Alterovitz,Peter Szolovits

Critical care (London, England), no. 6 (2008): R151-R151

Cited by31WOSBibtex

System-wide peripheral biomarker discovery using information theory.

Gil Alterovitz,Michael Xiang,Jonathan Liu,Amelia Chang,Marco F Ramoni

Pacific Symposium on Biocomputing, pp.231-242, (2008)

Cited by12WOSEIBibtex

Serum proteome profiling detects myelodysplastic syndromes and identifies CXC chemokine ligands 4 and 7 as markers for advanced disease.

Manuel Aivado,Dimitrios Spentzos,Ulrich Germing,Gil Alterovitz,Xiao-Ying Meng,Franck Grall,Aristoteles A N Giagounidis,Giannoula Klement,Ulrich Steidl,Hasan H Otu,Akos Czibere,Wolf C Prall

Proceedings of the National Academy of Sciences of the United States of America, no. 4 (2007): 1307-1312

Cited by73WOSBibtex

Systems Bioinformatics: An Engineering Case-Based Approach

Gil Alterovitz,Marco F. Ramoni

Systems Bioinformatics: An Engineering Case-Based Approach, (2007)

EIBibtex

An Information Theoretic Approach to Quantifying Evolutionary Functional Trends

Gil Alterovitz,T Muso,P Malalur,Marco F Ramoni

(2007)

Bibtex

A Systematic Approach to Quantifying Evolutionary Functional Trends Across the Universal Tree of Life

Gil Alterovitz,Taro Muso,Paresh Malalur,Marco Ramoni

BIBE, pp.374-378, (2007)

Cited by1EIBibtex

Linking Protein Mass with Function via Organismal Massome Networks

Gil Alterovitz,Eugenia Lyashenko,Michael Xiang,Marco Ramoni

BIBE, pp.59-65, (2007)

EIBibtex

Bayesian methods for proteomics.

Gil Alterovitz,Jonathan Liu,Ehsan Afkhami,Marco F Ramoni

Proteomics, no. 16 (2007): 2843-2855

Cited by20WOSBibtex

An Information Theoretic Framework for Ontology-based Bioinformatics

Gil Alterovitz,Michael Xiang,Marco F Ramoni

information theory and applications, (2007)

Cited by4Bibtex

GO PaD: the Gene Ontology Partition Database.

Gil Alterovitz,Michael Xiang,Mamta Mohan,Marco F Ramoni

Nucleic Acids Research, no. Database issue (2007): D322-7

Cited by45WOSEIBibtex

Automation, parallelism, and robotics for proteomics.

Gil Alterovitz,Jonathan Liu,Jijun Chow,Marco F Ramoni

Proteomics, no. 14 (2006): 4016-4022

Cited by12WOSBibtex

Human Protein Meta-Interaction Database (HPMD) Potentiates Integration for Meta-Analysis

Gil Alterovitz,Dmitriy Patek,Isaac S. Kohane,Marco F. Ramoni

(2005)

Cited by3Bibtex

A Bayesian framework for statistical signal processing and knowledge discovery in proteomic engineering

Alterovitz Gil

(2005)

Cited by1Bibtex

Protein Network Topology Metric Conservation: From Yeast to Human

Gil Alterovitz,Michael Xiang,Isaac S. Kohane,Marco F. Ramoni

(2005)

Cited by4Bibtex

A bayesian framework for statistical signal processing and knowledge discovery in proteomic engineering

Marco F. Ramoni,Isaac S. Kohane,Gil Alterovitz

A bayesian framework for statistical signal processing and knowledge discovery in proteomic engineer..., (2005)

Cited by1EIBibtex

Optimization and evaluation of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) with reversed-phase protein arrays for protein profiling.

Manuel Aivado,Dimitrios Spentzos,Gil Alterovitz,Hasan H Otu,Franck Grall,Aristoteles A N Giagounidis,Meghan Wells,Je-Yoel Cho,Ulrich Germing,Akos Czibere,Wolf C Prall,Chris Porter

Clinical chemistry and laboratory medicine : CCLM / FESCC, no. 2 (2005): 133-140

Cited by54WOSBibtex

Serum Protein Profiling with Mass Spectrometry for the Diagnosis of Myelodysplastic Syndromes.

Manuel Aivado,Dimitrios Spentzos,Ulrich Germing,Gil Alterovitz,Xiao-Ying Meng,Franck Grall,Aristoteles Giagounidis,Giannoula Klement,Ulrich Steidl,Hasan H. Otu,Christof Iking-Konert,Akos Czibere

Blood, no. 11 (2004): 2362-2362

Bibtex

Electrical engineering and nontechnical design variables of multiple inductive loop systems for auditoriums.

Gil Alterovitz

Journal of deaf studies and deaf education, no. 2 (2004): 202-209

WOSBibtex

Temporal patient state characterization using Iterative Order and Noise (ION) estimation: applications to anesthesia patient monitoring.

Gil Alterovitz,David H Staelin,James H Philip

Journal of clinical monitoring and computing, no. 6 (2002): 351-359

Cited by2WOSBibtex

Temporal characterization of patient state with applications to prediction of tachycardia in anesthesia via induction of inhaled desflurane

Alterovitz Gil

(2001)

Bibtex

Modular speech recognition system and method

Arthur Gerald Herkert, Oleg Andric, Lu Chang,Gil Alterovitz

(1998)

Cited by1Bibtex

Characterizing Human Protein Mass Density Distributions

Gil Alterovitz,Isaac S. Kohane,Marco F. Ramoni

Bibtex

Functional Enrichment Across Organism Massomes

Gil Alterovitz,Eugenia Lyashenko,Michael Xiang,Marco F. Ramoni

Bibtex

The Human Massome of Protein Interactions: A New Mass Spectrometry-Based Perspective

Gil Alterovitz,Dmitriy Patek,Marco F. Ramoni,Isaac S. Kohane

Cited by2Bibtex

ROBOTICS, AUTOMATION, AND STATISTICAL LEARNING FOR PROTEOMICS

Gil Alterovitz,Ehsan Afkhami,Marco Ramoni

Cited by3Bibtex

Reverse Engineering and Synthesis of Biomolecular Systems

Gil Alterovitz,Silvio Cavalcanti,Marco F. Ramoni,May D Wang, May D. Wang

Bibtex

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