Deborah A. Weighill

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Papers23 papers

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Network Modeling of Complex Data Sets

Piet Jones,Deborah Weighill,Manesh Shah,Sharlee Climer,Jeremy Schmutz,Avinash Sreedasyam,Gerald Tuskan,Daniel Jacobson

Methods of Molecular Biology, (2020): 197-215

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Linking crop traits to transcriptome differences in a progeny population of tetraploid potato

Erik Alexandersson,Sandeep Kushwaha, Aastha Subedi,Deborah Weighill,Sharlee Climer,Daniel Jacobson,Erik Andreasson

BMC Plant Biology, no. 1 (2020): 1-14

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Data Integration in Poplar: ‘Omics Layers and Integration Strategies

Deborah Weighill,Timothy J. Tschaplinski,Gerald A. Tuskan,Daniel Jacobson

Frontiers in Genetics, (2019)

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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

Anna Furches,David Kainer,Deborah Weighill, Annabel Large, Piet Jones, Angelica M Walker, Jonathon Romero, Joao Gabriel Felipe Machado Gazolla, Wayne Joubert,Manesh Shah, Jared Streich,Priya Ranjan

Frontiers in plant science, (2019): 1249

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Parallel Accelerated Custom Correlation Coefficient Calculations for Genomics Applications

Wayne Joubert, James Nance,Sharlee Climer,Deborah A. Weighill,Daniel A. Jacobson

Parallel Computing, (2019)

Cited by9EIBibtex

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Deborah Weighill,David Macaya-Sanz,Stephen Paul DiFazio, Wayne Joubert,Manesh Shah,Jeremy Schmutz,Avinash Sreedasyam,Gerald Tuskan,Daniel Jacobson

Frontiers in Genetics, (2019)

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Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype

Gregory Bonito,Gian Maria Niccolò Benucci, Khalid Hameed,Deborah Weighill, Piet Jones, Ko-Hsuan Chen,Daniel Jacobson,Christopher Schadt,Rytas Vilgalys

Frontiers in Microbiology, (2019)

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Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships

Deborah Weighill, Piet Jones, Carissa Bleker,Priya Ranjan,Manesh Shah,Nan Zhao,Madhavi Martin,Stephen DiFazio,David Macaya-Sanz,Jeremy Schmutz,Avinash Sreedasyam,Timothy Tschaplinski

Frontiers in genetics, (2019): 417

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Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype

Gregory Bonito,Gian Maria Niccolò Benucci, Khalid Hameed,Deborah Weighill, Piet Jones, Ko-Hsuan Chen,Daniel Jacobson,Christopher Schadt,Rytas Vilgalys

Frontiers in microbiology, (2019): 481

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Parallel Accelerated Vector Similarity Calculations for Genomics Applications

Wayne Joubert, James Nance,Deborah Weighill,Daniel Jacobson

Parallel Computing, (2018)

Cited by8EIBibtex

A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein

Anthony C. Bryan,Jin Zhang,Jianjun Guo,Priya Ranjan,Vasanth Singan,Kerrie Barry,Jeremy Schmutz,Deborah A. Weighill,Deborah A. Weighill,Dan Jacobson,Sara Jawdy,Gerald A. Tuskan

G3: Genes, Genomes, Genetics, no. 8 (2018): 2631-2641

Cited by1Bibtex

Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses

Laura L. Lee,Sara E. Blumer-Schuette,Javier A. Izquierdo,Jeffrey V. Zurawski,Andrew J. Loder,Jonathan M. Conway,James G. Elkins,Mircea Podar,Alicia Clum, Piet C. Jones,Marek J. Piatek,Deborah A. Weighill

Applied and Environmental Microbiology, no. 9 (2018)

Cited by3Bibtex

Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

Deborah Weighill, Piet Jones,Manesh Shah,Priya Ranjan,Wellington Muchero,Jeremy Schmutz,Avinash Sreedasyam,David Macaya-Sanz,Robert Sykes,Nan Zhao,Madhavi Z. Martin,Stephen DiFazio

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High Throughput Screening Technologies in Biomass Characterization

Stephen R. Decker, Anne E. Harman-Ware,Renee M. Happs,Edward J. Wolfrum,Gerald A. Tuskan,David Kainer,Gbekeloluwa B. Oguntimein,Miguel Rodriguez,Deborah Weighill, Piet Jones,Daniel A. Jacobson

Frontiers in Energy Research, (2018)

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Defining the genetic components of callus formation: A GWAS approach

Gerald A Tuskan, Ritesh Mewalal,Lee E Gunter, Kaitlin J Palla, Kelsey Carter,Daniel A Jacobson, Piet C Jones,Benjamin J Garcia,Deborah A Weighill, Philip D Hyatt, Yongil Yang,Jin Zhang

PloS one, no. 8 (2018)

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Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction

Wayne Joubert,Deborah Weighill,David Kainer,Sharlee Climer,Amy Justice, Kjiersten Fagnan,Daniel Jacobson

SC18: The International Conference for High Performance Computing, Networking, Storage and Analysis ..., pp.1-14, (2018)

Cited by16EIBibtex

Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

Deborah A. Weighill,Deborah A. Weighill, Piet C. Jones, Piet C. Jones,Manesh B Shah,Priya Ranjan,Priya Ranjan,Wellington Muchero,Jeremy Schmutz,Avinash Sreedasyam,David Macaya-Sanz,Robert W. Sykes

Frontiers in Energy Research, (2018): 267997

Cited by2Bibtex

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Xiaohan Yang,Rongbin Hu,Hengfu Yin,Jerry Jenkins,Shengqiang Shu,Haibao Tang,Degao Liu,Deborah A Weighill,Won Cheol Yim, Jungmin Ha, Karolina Heyduk,David M Goodstein

Nature communications, no. 1 (2017): 1899

WOSBibtex

Network Metamodeling: Effect of Correlation Metric Choice on Phylogenomic and Transcriptomic Network Topology

Deborah A. Weighill,Daniel Jacobson

NETWORK BIOLOGY, (2017): 143-183

Bibtex

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave

Paul E. Abraham,Hengfu Yin,Anne M. Borland,Deborah A. Weighill, Sung Don Lim, Henrique Cestari De Paoli,Nancy L. Engle, Piet C. Jones, Ryan Agh,David J. Weston,Stan D. Wullschleger,Timothy J. Tschaplinski

Nature Plants, (2016): 16178

Cited by25WOSNATUREBibtex

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