Kainer David

Division of Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT, Australia david.kainer@anu.edu.au.

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Papers23 papers

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Functional Immune Deficiency Syndrome via Intestinal Infection in COVID-19

Erica T. Prates, Michael R. Garvin, Mirko Pavicic, Piet Jones,Manesh Shah, Christiane Alvarez,David Kainer, Omar Demerdash, B Kirtley Amos, Armin Geiger, John Pestian,Kang Jin

bioRxiv, pp.1-29, (2020)

Bibtex

Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals

Jared Streich, Jonathon Romero, João Gabriel Felipe Machado Gazolla,David Kainer, Ashley Cliff, Erica Teixeira Prates, James B Brown, Sacha Khoury,Gerald A Tuskan, Michael Garvin,Daniel Jacobson, Antoine L Harfouche

Current Opinion in Biotechnology, (2020): 217-225

Cited by2Bibtex

The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies

Weiwen Wang, Ashutosh Das,David Kainer, Miriam Schalamun, Alejandro Morales-Suarez,Benjamin Schwessinger,Robert Lanfear

GigaScience, no. 1 (2020)

WOSBibtex

Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models

Michael R Garvin, Erica T Prates, Mirko Pavicic, Piet Jones, B Kirtley Amos, Armin Geiger,Manesh B Shah, Jared Streich, Joao Gabriel Felipe Machado Gazolla,David Kainer, Ashley Cliff, Jonathon Romero

Genome biology, no. 1 (2020): 304

WOSBibtex

Multi-trait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits

Hari B Chhetri,David Macaya-Sanz,David Kainer,Ajaya K Biswal,Luke M Evans,Jin-Gui Chen,Cassandra Collins,Kimberly Hunt,Sushree S Mohanty,Todd Rosenstiel,David Ryno,Kim Winkeler

The New phytologist, (2019)

WOSBibtex

High marker density GWAS provides novel insights into the genomic architecture of terpene oil yield in Eucalyptus

David Kainer,Amanda Padovan, Joerg Degenhardt,Sandra Krause, Prodyut Mondal,William J Foley, Carsten Külheim

The New phytologist, (2019)

WOSBibtex

A High-Performance Computing Implementation of Iterative Random Forest for the Creation of Predictive Expression Networks

Ashley Cliff, Jonathon Romero,David Kainer, Angelica Walker, Anna Furches,Daniel Jacobson

Genes, no. 12 (2019)

WOSBibtex

Accelerating Climate Resilient Plant Breeding by Applying Next-Generation Artificial Intelligence

Antoine L. Harfouche,Daniel A. Jacobson,David Kainer, Jonathon C. Romero, Antoine H. Harfouche,Giuseppe Scarascia Mugnozza, Menachem Moshelion,Gerald A. Tuskan,Joost J.B. Keurentjes,Arie Altman

Trends in Biotechnology, (2019)

Bibtex

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

Anna Furches,David Kainer,Deborah Weighill, Annabel Large, Piet Jones, Angelica M Walker, Jonathon Romero, Joao Gabriel Felipe Machado Gazolla, Wayne Joubert,Manesh Shah, Jared Streich,Priya Ranjan

Frontiers in plant science, (2019): 1249

WOSBibtex

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case