David E Kim - Department of Biochemistry, University of Washington

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Papers共 51 篇Author StatisticsCo-AuthorSimilar Experts

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De Novo Design of Miniprotein Agonists and Antagonists Targeting G Protein-Coupled Receptors

Edin Muratspahić,David Feldman,David E Kim, Xiangli Qu, Ana-Maria Bratovianu, Paula Rivera-Sánchez, Federica Dimitri, Jason Cao,Brian P Cary,Matthew J Belousoff,Peter Keov, Qingchao Chen, Yue Ren, Justyn Fine, Isaac Sappington, Thomas Schlichthaerle,Jason Z Zhang,Arvind Pillai, Ljubica Mihaljević, Magnus Bauer, Susana Vázquez Torres, Amir Motmaen, Gyu Rie Lee, Long Tran, Xinru Wang, Inna Goreshnik, Dionne K Vafeados, Justin E Svendsen,Parisa Hosseinzadeh, Nicolai Lindegaard, Matthäus Brandt, Yann Waltenspühl, Kristine Deibler, Luke Oostdyk, William Cao, Lakshmi Anantharaman,Lance Stewart, Lauren Halloran,Jamie B Spangler,Patrick M Sexton,Bryan L Roth,Brian E Krumm,Denise Wootten,Christopher G Tate,Christoffer Norn,David Baker

bioRxiv the preprint server for biology (2025)

Cited0Views0WOSBibtex

Parametrically Guided Design of Beta Barrels and Transmembrane Nanopores Using Deep Learning

David E Kim,Joseph L Watson,David Juergens,Sagardip Majumder, Ria Sonigra,Stacey R Gerben,Alex Kang,Asim K Bera,Xinting Li,David Baker

bioRxiv the preprint server for biology (2025)

Cited0Views0WOSBibtex

Solubilization of Membrane Proteins Using Designed Protein WRAPS

Ljubica Mihaljević,David E Kim,Helen E Eisenach, Pooja D Bandawane,Andrew J Borst,Alexis Courbet, Everton Bettin, Qiushi Liu,Connor Weidle,Sagardip Majumder,Xinting Li,Mila Lamb, Analisa Nicole Azcárraga Murray,Rashmi Ravichandran, Elizabeth C Williams, Shuyuan Hu, Lynda Stuart, Linda Grillová, Nicholas R Thomson, Pengxiang Chang,Melissa J Caimano,Kelly L Hawley,Neil P King,David Baker

bioRxiv the preprint server for biology (2025)

Cited0Views0WOSBibtex

De Novo Design of Small Beta Barrel Proteins

David E. Kim,Davin R. Jensen,David Feldman,Doug Tischer,Ayesha Saleem,Cameron M. Chow,Xinting Li,Lauren Carter,Lukas Milles,Hannah Nguyen,Alex Kang,Asim K. Bera,Francis C. Peterson,Brian F. Volkman,Sergey Ovchinnikov,David Baker

Zenodo (CERN European Organization for Nuclear Research) (2022)

Cited15Views0WOSBibtex

Protein Sequence Design by Conformational Landscape Optimization

Christoffer Norn,Basile I. M. Wicky,David Juergens,Sirui Liu,David Kim,Doug Tischer,Brian Koepnick,Ivan Anishchenko,Foldit Players,David Baker,Sergey Ovchinnikov

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICAno. 11 (2021)

Cited136Views0WOSBibtex

136

Protein Tertiary Structure Prediction and Refinement Using Deep Learning and Rosetta in CASP14

Ivan Anishchenko,Minkyung Baek,Hahnbeom Park,Naozumi Hiranuma,David E. Kim,Justas Dauparas,Sanaa Mansoor,Ian R. Humphreys,David Baker

Proteins Structure Function and Bioinformatics（2021）

Cited41Views0WOSBibtex

High‐accuracy Refinement Using Rosetta in CASP13

Hahnbeom Park,Gyu Rie Lee,David E. Kim,Ivan Anishchenko,Qian Cong,David Baker

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS（2019）

Cited30Views0WOSBibtex

CASP12におけるロゼッタを用いた蛋白質構造の予測【Powered by NICT】

Ovchinnikov Sergey,Park Hahnbeom,E Kim David,DiMaio Frank,Baker David

Proteins Structure Function and Bioinformatics（2018）

Cited0Views0Bibtex

Protein Structure Prediction Using Rosetta in CASP12

Sergey Ovchinnikov,Hahnbeom Park,David E. Kim,Frank DiMaio,David Baker

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS（2018）

Cited87Views0WOSBibtex

An Analysis and Evaluation of the WeFold Collaborative for Protein Structure Prediction and Its Pipelines in CASP11 and CASP12

Chen Keasar,Liam J. McGuffin,Björn Wallner,Gaurav Chopra,Badri Adhikari,Debswapna Bhattacharya,Lauren Blake,Leandro Oliveira Bortot,Renzhi Cao,B. K. Dhanasekaran, Itzhel Dimas,Rodrigo Antonio Faccioli,Eshel Faraggi,Robert Ganzynkowicz,Sambit Ghosh,Soma Ghosh,Artur Giełdoń,Lukasz Golon,Yi He,Lim Heo,Jie Hou, Main Khan,Firas Khatib,George A. Khoury,Chris Kieslich,David E. Kim,Pawel Krupa,Gyu Rie Lee, Hongbo Li,Jilong Li,Agnieszka Lipska,Adam Liwo,Ali Hassan A. Maghrabi,Milot Mirdita,Shokoufeh Mirzaei,Magdalena A. Mozolewska,Melis Onel,Sergey Ovchinnikov, Anand Shah,Utkarsh Shah,Tomer Sidi,Adam K. Sieradzan,Magdalena Ślusarz,Rafal Ślusarz,James Smadbeck,Phanourios Tamamis, Nicholas Trieber,Tomasz Wirecki,Yanping Yin,Yang Zhang,Jaume Bacardit,Maciej Baranowski,Nicholas Chapman,Seth Cooper,Alexandre Defelicibus,Jeff Flatten,Brian Koepnick,Zoran Popović,Bartlomiej Zaborowski,David Baker,Jianlin Cheng,Cezary Czaplewski,Alexandre Cláudio Botazzo Delbem,Christodoulos Floudas,Andrzej Kloczkowski,Stanislaw Ołdziej,Michael Levitt,Harold Scheraga,Chaok Seok,Johannes Söding,Saraswathi Vishveshwara,Dong Xu, Ahmet Caglar III,Silvia N. Crivelli

Scientific Reports（2018）

Cited25Views0WOSNATUREBibtex

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