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个人简介
My interests span the broad relationships between protein sequences, structures and functions and how these evolve with time. As such, I apply a wide range of bioinformatics tools - but especially modelling software like AlphaFold 2 - to diverse proteins of interest. This leads to interesting collaborations across the Institute and more broadly. I apply structural bioinformatics developments to produce software for experimental structural biology. A prime interest is solution of crystal structures by Molecular Replacement. This has encompassed use of unconventional protein models - program AMPLE (ample.readthedocs.io) - and crystallisation contaminant detection with SIMBAD (simbad.readthedocs.io), both available as part of the CCP4 suite (www.ccp4.ac.uk). I am also interested in methods development for cryo-EM map interpretation and fitting, and for protein structure validation.
研究兴趣
论文共 330 篇作者统计合作学者相似作者
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Zhanmin Liang, Haokai Ye, Jiongming Ma,Zhen Wei,Yue Wang, Yuxin Zhang,Daiyun Huang,Bowen Song,Jia Meng,Daniel J. Rigden,Kunqi Chen
NUCLEIC ACIDS RESEARCHno. D1 (2024): D194-D202
Journal of Molecular Biologyno. 4 (2024): 168434-168434
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NUCLEIC ACIDS RESEARCHno. D1 (2024): D203-D212
Hannah L. Glover,Marta Mendes, Joana Gomes-Neto, Emma Rusilowicz-Jones,Daniel J. Rigden,Gunnar Dittmar,Sylvie Urbe,Michael J. Clague
JOURNAL OF CELL SCIENCEno. 2 (2024)
Nucleic acids research (2024)
bioRxiv : the preprint server for biologyno. 12 (2023): 1935-1951
Rhiju Das,Rachael C. Kretsch,Adam J. Simpkin, Thomas Mulvaney, Phillip Pham,Ramya Rangan, Fan Bu,Ronan M. Keegan,Maya Topf,Daniel J. Rigden,Zhichao Miao,Eric Westhof
Proteins: Structure, Function, and Bioinformaticsno. 12 (2023)
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bioRxiv : the preprint server for biologyno. 12 (2023): 1747-1770
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